Calculate Pathway Results for Metabolite Comparisons

Usage

calculate_pathway_results(
  data,
  comparison_var,
  covariates = NULL,
  metabolites,
  comparison_type = "auto",
  use_point_correlation = FALSE,
  df = lifecycle::deprecated()
)

Arguments

data: Data frame containing metabolite and comparison data
comparison_var: Character string specifying the comparison variable name
covariates: Character vector of covariate names (optional)
metabolites: Character vector of metabolite names to analyze
comparison_type: Character string: "auto", "binary", or "continuous"
use_point_correlation: Logical, if TRUE uses point correlation for binary comparisons
df: Deprecated (since 19.15.0). Use data instead.

Value

Data frame with metabolite results including fold change or correlation values

Examples

if (FALSE) { # \dontrun{
results <- calculate_pathway_results(
  data = my_data,
  comparison_var = "poorSleep",
  covariates = c("Age", "BMI"),
  metabolites = c("Tryptophan", "Kynurenine"),
  comparison_type = "binary"
)
} # }